org.jmol.jvxl.readers
Class IsoPlaneReader

java.lang.Object
  extended by org.jmol.jvxl.readers.VoxelReader
      extended by org.jmol.jvxl.readers.VolumeDataReader
          extended by org.jmol.jvxl.readers.AtomDataReader
              extended by org.jmol.jvxl.readers.IsoPlaneReader
All Implemented Interfaces:
VertexDataServer

 class IsoPlaneReader
extends AtomDataReader


Field Summary
 
Fields inherited from class org.jmol.jvxl.readers.AtomDataReader
atomCount, atomData, atomDataServer, atomIndex, atomNo, atomProp, atomRadius, atomXyz, bsMyIgnored, bsMySelected, doAddHydrogens, doUseIterator, doUsePlane, fileDotModel, fileName, firstNearbyAtom, modelIndex, myAtomCount, myIndex, nearbyAtomCount
 
Fields inherited from class org.jmol.jvxl.readers.VolumeDataReader
allowMapData, anisotropy, center, dataType, eccentricityMatrix, eccentricityMatrixInverse, eccentricityRatio, eccentricityScale, isAnisotropic, isEccentric, point, precalculateVoxelData
 
Fields inherited from class org.jmol.jvxl.readers.VoxelReader
ANGSTROMS_PER_BOHR, cJvxlEdgeNaN, colorEncoder, colorFractionBase, colorFractionRange, contourVertexCount, defaultColorFractionBase, defaultColorFractionRange, defaultCutoff, defaultEdgeFractionBase, defaultEdgeFractionRange, defaultMappedDataMax, defaultMappedDataMin, edgeFractionBase, edgeFractionRange, fractionData, fReturn, isApbsDx, isJvxl, isProgressive, isXLowToHigh, jvxlColorDataRead, jvxlCutoff, jvxlData, jvxlDataIs2dContour, jvxlDataIsColorMapped, jvxlDataIsPrecisionColor, jvxlEdgeDataRead, jvxlFileHeaderBuffer, jvxlNSurfaceInts, marchingSquares, meshData, meshDataServer, nBytes, nDataPoints, nPointsX, nPointsY, nPointsZ, params, ptTemp, sg, volumeData, volumetricOrigin, volumetricVectors, voxelCounts, voxelData
 
Constructor Summary
IsoPlaneReader(SurfaceGenerator sg)
           
 
Method Summary
protected  float getValue(int x, int y, int z)
           
protected  void setup()
           
 
Methods inherited from class org.jmol.jvxl.readers.AtomDataReader
fixTitleLine, getAtoms, setHeader, setRangesAndAddAtoms
 
Methods inherited from class org.jmol.jvxl.readers.VolumeDataReader
generateCube, readVolumeData, readVolumeParameters, readVoxelData, readVoxelDataIndividually, setVoxelRange
 
Methods inherited from class org.jmol.jvxl.readers.VoxelReader
addTriangleCheck, addVertexCopy, applyColorScale, colorIsosurface, createIsosurface, discardTempData, excludeMaximumSet, excludeMinimumSet, getCalcPoint, getColorIndexFromPalette, getColorPhaseIndex, getMaxMappedValue, getMinMappedValue, getSurfacePointIndex, gotoAndReadVoxelData, gotoData, initializeVolumetricData, isInside, jvxlUpdateInfo, readColorData, readSurfacePoint, resetIsosurface, selectPocket, setVolumeData, updateSurfaceData, updateTriangles
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

IsoPlaneReader

IsoPlaneReader(SurfaceGenerator sg)
Method Detail

setup

protected void setup()
Overrides:
setup in class AtomDataReader

getValue

protected float getValue(int x,
                         int y,
                         int z)
Overrides:
getValue in class VolumeDataReader