Constant Field Values


Contents
org.jmol.*

org.jmol.adapter.readers.cifpdb.CifReader
private static final byte ADP_TYPE 46
private static final byte ALT_ID 15
private static final byte ANISO_B11 34
private static final byte ANISO_B12 37
private static final byte ANISO_B13 38
private static final byte ANISO_B22 35
private static final byte ANISO_B23 39
private static final byte ANISO_B33 36
private static final byte ANISO_Beta_11 40
private static final byte ANISO_Beta_12 43
private static final byte ANISO_Beta_13 44
private static final byte ANISO_Beta_22 41
private static final byte ANISO_Beta_23 45
private static final byte ANISO_Beta_33 42
private static final byte ANISO_LABEL 20
private static final byte ANISO_MMCIF_U11 27
private static final byte ANISO_MMCIF_U12 30
private static final byte ANISO_MMCIF_U13 31
private static final byte ANISO_MMCIF_U22 28
private static final byte ANISO_MMCIF_U23 32
private static final byte ANISO_MMCIF_U33 29
private static final byte ANISO_U11 21
private static final byte ANISO_U12 24
private static final byte ANISO_U13 25
private static final byte ANISO_U22 22
private static final byte ANISO_U23 26
private static final byte ANISO_U33 23
private static final byte ASYM_ID 12
private static final byte ATOM_TYPE_OXIDATION_NUMBER 1
private static final byte ATOM_TYPE_SYMBOL 0
private static final byte AUTH_ATOM 2
private static final byte B_ISO 10
private static final byte BEG_ASYM_ID 1
private static final byte BEG_INS_CODE 3
private static final byte BEG_SEQ_ID 2
private static final byte CARTN_X 6
private static final byte CARTN_Y 7
private static final byte CARTN_Z 8
private static final byte CHEM_COMP_ID 0
private static final byte CHEM_COMP_NAME 1
private static final byte COMP_ID 11
private static final byte CONF_TYPE_ID 0
private static final byte DISORDER_GROUP 19
private static final byte DUMMY_ATOM 18
private static final byte END_ASYM_ID 4
private static final byte END_INS_CODE 6
private static final byte END_SEQ_ID 5
private static final byte FRACT_X 3
private static final byte FRACT_Y 4
private static final byte FRACT_Z 5
private static final byte GEOM_BOND_ATOM_SITE_LABEL_1 0
private static final byte GEOM_BOND_ATOM_SITE_LABEL_2 1
private static final byte GEOM_BOND_SITE_SYMMETRY_2 2
private static final byte GROUP_PDB 16
private static final byte INS_CODE 14
private static final byte LABEL 1
private static final byte MODEL_NO 17
private static final byte NONE -1
private static final byte NONPOLY_COMP_ID 2
private static final byte NONPOLY_ENTITY_ID 0
private static final byte NONPOLY_NAME 1
private static final byte OCCUPANCY 9
private static final byte SEQ_ID 13
private static final byte SITE_ASYM_ID 2
private static final byte SITE_COMP_ID 1
private static final byte SITE_ID 0
private static final byte SITE_INS_CODE 4
private static final byte SITE_SEQ_ID 3
private static final byte SYM_EQUIV_XYZ 1
private static final byte SYMOP_XYZ 0
private static final byte TYPE_SYMBOL 0
private static final byte U_ISO_OR_EQUIV 33

org.jmol.adapter.readers.cifpdb.PdbReader
private static final java.lang.String lineOptions "ATOM HETATM MODEL CONECT HELIX SHEET TURN HET HETNAM ANISOU SITE CRYST1 SCALE1 SCALE2 SCALE3 EXPDTA FORMUL REMARK HEADER COMPND "

org.jmol.adapter.readers.molxyz.MolReader
private static final java.lang.String isotopeMap0 "H1 H2 "
private static final java.lang.String isotopeMap1 "D T "

org.jmol.adapter.readers.more.CsfReader
static final byte anum 2
static final byte bfxn_ang 6
static final byte bondType 1
static final byte chrg 3
static final byte coef_indices 5
static final byte contractions 8
static final byte eig_val 1
static final byte eig_vec 3
static final byte eig_vec_compressed 4
static final byte gto_exp 9
static final byte ID -1
static final byte mo_occ 2
static final byte normalMode 1
static final byte objCls1 1
static final byte objCls2 3
static final byte objID1 2
static final byte objID2 4
static final byte pchrg 5
static final byte shell 10
static final byte sto_exp 7
static final byte sym 1
static final byte transitionDipole 3
static final byte vibEnergy 2
static final byte xyz_coordinates 4

org.jmol.adapter.readers.more.FoldingXyzReader
private static final boolean useAutoBond false

org.jmol.adapter.readers.more.GaussianReader
private static final int FREQ_FIRST_VECTOR_OFFSET 2
private static final int STD_ORIENTATION_ATOMIC_NUMBER_OFFSET 1

org.jmol.adapter.readers.more.MopacData
private static final float fourPi 12.566370964050293f

org.jmol.adapter.readers.more.org.jmol.adapter.readers.more.MopacDataReader
protected static final float MIN_COEF 9.999999747378752E-5f

org.jmol.adapter.readers.xml.XmlArgusReader
static final int ATOM 2
static final int BOND 3
static final int MOLECULE 1
static final int UNSET 0

org.jmol.adapter.readers.xml.XmlCmlReader
protected final int CML 1
protected final int CRYSTAL 2
protected final int CRYSTAL_SCALAR 3
protected final int CRYSTAL_SYMMETRY 4
protected final int CRYSTAL_SYMMETRY_TRANSFORM3 5
protected final int LATTICE_VECTOR 18
protected final int MODULE 15
protected final int MOLECULE 6
protected final int MOLECULE_ATOM 8
protected final int MOLECULE_ATOM_ARRAY 7
protected final int MOLECULE_ATOM_BUILTIN 13
protected final int MOLECULE_ATOM_SCALAR 9
protected final int MOLECULE_BOND 11
protected final int MOLECULE_BOND_ARRAY 10
protected final int MOLECULE_BOND_BUILTIN 14
protected final int MOLECULE_FORMULA 12
protected final int START 0
protected final int SYMMETRY 17

org.jmol.adapter.smarter.AtomSetCollection
static final int GLOBAL_FRACTCOORD 0
static final int GLOBAL_latticeCells 2
static final int GLOBAL_SYMMETRY 1

org.jmol.adapter.smarter.AtomSetCollectionReader
public static final float ANGSTROMS_PER_BOHR 0.529177188873291f

org.jmol.adapter.smarter.Resolver
private static final java.lang.String classBase "org.jmol.adapter.readers."
private static final java.lang.String CML_NAMESPACE_URI "http://www.xml-cml.org/schema"
static final int LEADER_CHAR_MAX 20
public static final int SPECIAL_ARGUS_DOM 13
public static final int SPECIAL_ARGUS_XML 8
public static final int SPECIAL_CHEM3D_DOM 15
public static final int SPECIAL_CHEM3D_XML 10
public static final int SPECIAL_CML_DOM 14
public static final int SPECIAL_CML_XML 9
static final int SPECIAL_CUBE 7
static final int SPECIAL_FOLDINGXYZ 6
static final int SPECIAL_JME 0
static final int SPECIAL_MOL 4
public static final int SPECIAL_MOLPRO_DOM 16
public static final int SPECIAL_MOLPRO_XML 11
static final int SPECIAL_MOPACGRAPHF 1
static final int SPECIAL_ODYSSEY 3
public static final int SPECIAL_ODYSSEY_DOM 17
public static final int SPECIAL_ODYSSEY_XML 12
static final int SPECIAL_V3000 2
static final int SPECIAL_XYZ 5

org.jmol.adapter.smarter.SmarterJmolAdapter
public static final java.lang.String PATH_KEY ".PATH"

org.jmol.api.JmolAdapter
public static final short ORDER_AROMATIC 515
public static final short ORDER_AROMATIC_DOUBLE 514
public static final short ORDER_AROMATIC_SINGLE 513
public static final short ORDER_COVALENT_DOUBLE 2
public static final short ORDER_COVALENT_SINGLE 1
public static final short ORDER_COVALENT_TRIPLE 3
public static final short ORDER_HBOND 2048
public static final short ORDER_PARTIAL01 33
public static final short ORDER_PARTIAL12 66
public static final short ORDER_PARTIAL23 97
public static final short ORDER_PARTIAL32 100
public static final short ORDER_STEREO_FAR 1026
public static final short ORDER_STEREO_NEAR 1025
public static final short ORDER_UNSPECIFIED 7
public static final int SHELL_D_CARTESIAN 3
public static final int SHELL_D_SPHERICAL 4
public static final int SHELL_F_CARTESIAN 5
public static final int SHELL_F_SPHERICAL 6
public static final int SHELL_L 2
public static final int SHELL_P 1
public static final int SHELL_S 0
public static final int SHELL_SP 2

org.jmol.applet.Jmol
private static final boolean REQUIRE_PROGRESSBAR true
private static final int SCRIPT_CHECK 0
private static final int SCRIPT_NOWAIT 2
private static final int SCRIPT_WAIT 1

org.jmol.appletwrapper.org.jmol.appletwrapper.WrappedAppletLoader
private static final int minimumLoadSeconds 0

org.jmol.atomdata.AtomData
public static final int MODE_FILL_COORDS 1
public static final int MODE_FILL_COORDS_AND_RADII 2
public static final int MODE_GET_ATTACHED_HYDROGENS 3

org.jmol.bspt.Bspt
static final int leafCountMax 2
static final int MAX_TREE_DEPTH 100

org.jmol.export._Exporter
protected static final float degreesPerRadian 57.295780181884766f

org.jmol.export.image.GifEncoder
static final int BITS 12
static final int EOF -1
static final int HSIZE 5003

org.jmol.export.image.PngEncoder
public static final boolean ENCODE_ALPHA true
public static final int FILTER_LAST 2
public static final int FILTER_NONE 0
public static final int FILTER_SUB 1
public static final int FILTER_UP 2
public static final boolean NO_ALPHA false

org.jmol.g3d.Font3D
private static final int FONT_ALLOCATION_UNIT 8
public static final int FONT_FACE_MONO 2
public static final int FONT_FACE_SANS 0
public static final int FONT_FACE_SERIF 1
public static final int FONT_STYLE_BOLD 1
public static final int FONT_STYLE_BOLDITALIC 3
public static final int FONT_STYLE_ITALIC 2
public static final int FONT_STYLE_PLAIN 0

org.jmol.g3d.Graphics3D
private static final int ALPHA_SHIFT 13
public static final short BLACK 4
public static final short BLUE 7
private static final short CHANGEABLE_MASK -32768
public static final short CYAN 9
public static final byte ENDCAPS_FLAT 2
public static final byte ENDCAPS_NONE 0
public static final byte ENDCAPS_OPEN 1
public static final byte ENDCAPS_OPENEND 4
public static final byte ENDCAPS_SPHERICAL 3
public static final short GOLD 23
public static final short GRAY 12
public static final short GREEN 11
public static final short HOTPINK 22
public static final short INHERIT_ALL 0
private static final short INHERIT_COLOR 1
public static final short LIME 14
public static final short MAGENTA 20
public static final short MAROON 15
public static final short NAVY 16
public static final short OLIVE 17
public static final short OPAQUE_MASK -30721
public static final short ORANGE 5
public static final short PINK 6
public static final short PURPLE 18
public static final short RED 10
public static final byte shadeLast 63
public static final byte shadeMax 64
public static final short SILVER 13
static final short SPECIAL_COLIX_MAX 4
public static final short TEAL 19
static final int TRANSLUCENT_50 8192
private static final int TRANSLUCENT_MASK 30720
private static final int TRANSLUCENT_SCREENED 30720
private static final int TRANSLUCENT_SHIFT 11
private static final int TRANSPARENT 16384
private static final short UNMASK_CHANGEABLE_TRANSLUCENT 2047
static final short UNUSED_OPTION3 3
public static final short USE_PALETTE 2
public static final short WHITE 8
public static final short YELLOW 21

org.jmol.g3d.org.jmol.g3d.Line3D
static final int VISIBILITY_CLIPPED 1
static final int VISIBILITY_OFFSCREEN 2
static final int VISIBILITY_UNCLIPPED 0
static final int xGT 4
static final int xLT 8
static final int yGT 1
static final int yLT 2
static final int zGT 16
static final int zLT 32

org.jmol.g3d.org.jmol.g3d.Normix3D
private static final boolean DEBUG_FACE_VECTORS false
private static final boolean DEBUG_WITH_SEQUENTIAL_SEARCH false
static final int NORMIX_GEODESIC_LEVEL 3
private static final boolean TIMINGS false

org.jmol.g3d.org.jmol.g3d.Platform3D
static final boolean desireClearingThread false
static final boolean forcePlatformAWT false

org.jmol.g3d.org.jmol.g3d.Shade3D
static final int shadeLast 63
static final int shadeMax 64
private static final float xLightsource -1.0f
private static final float yLightsource -1.0f
private static final float zLightsource 2.5f

org.jmol.g3d.Sphere3D
private static final int maxOddSizeSphere 49
private static final int maxSphereCache 128
static final int maxSphereDiameter 1000
static final int maxSphereDiameter2 2000
private static final int SDIM 40
private static final int SLIM 20

org.jmol.g3d.org.jmol.g3d.Triangle3D
private static final int DEFAULT 64
private static final boolean VERIFY false

org.jmol.geodesic.EnvelopeCalculation
public static final int MAX_LEVEL 3
public static final float SURFACE_DISTANCE_FOR_CALCULATION 3.0f

org.jmol.geodesic.Geodesic
private static final int maxLevel 4
static final float oneFifth 1.2566370964050293f
static final float oneTenth 0.6283185482025146f
public static final int standardLevel 3
private static final boolean VALIDATE true

org.jmol.jcamp.GraphCharacteristics
private static final java.lang.String INTEGRATION_DELIM ","
private static final java.lang.String INTEGRATION_VALUES_DELIM ":"
private static final int MAX_DECIMALS 2

org.jmol.jvxl.calc.MarchingSquares
public static final int CONTOUR_POINT -1
private static final int defaultContourCount 11
public static final int EDGE_POINT -3
private static final int nContourMax 100
public static final int VERTEX_POINT -2

org.jmol.jvxl.data.MeshData
public static final int MODE_GET_COLOR_INDEXES 2
public static final int MODE_GET_VERTICES 1
public static final int MODE_PUT_SETS 3
private static final int SEED_COUNT 25

org.jmol.jvxl.readers.org.jmol.jvxl.readers.IsoShapeReader
private static final double A0 0.5291799902915955
private static final double ROOT2 1.414214

org.jmol.jvxl.readers.JvxlReader
private static final java.lang.String JVXL_VERSION "1.4"

org.jmol.jvxl.readers.Parameters
static final float ANGSTROMS_PER_BOHR 0.529177188873291f
static final int CAN_CONTOUR 512
static final int defaultColorFractionBase 35
static final int defaultColorFractionRange 90
static final int defaultColorNegative -65536
static final int defaultColorNegativeLCAO -8388480
static final int defaultColorPositive -16776961
static final int defaultColorPositiveLCAO -23296
static final int defaultContourCount 11
static final float defaultCutoff 0.019999999552965164f
static final int defaultEdgeFractionBase 35
static final int defaultEdgeFractionRange 90
static final float defaultMappedDataMax 1.0f
static final float defaultMappedDataMin 0.0f
static final float defaultMepCutoff 0.05000000074505806f
static final float defaultMepMax 0.05000000074505806f
static final float defaultMepMin -0.05000000074505806f
static final float defaultOrbitalCutoff 0.14000000059604645f
public static final float defaultQMOrbitalCutoff 0.05000000074505806f
static final float defaultSolventRadius 1.2000000476837158f
static final int HAS_MAXGRID 256
static final int IS_SILENT 64
static final int IS_SOLVENTTYPE 128
public static final int MEP_MAX_GRID 40
public static final int MO_MAX_GRID 80
static final int nContourMax 100
static final int NO_ANISOTROPY 32
static final int QM_TYPE_GAUSSIAN 1
static final int QM_TYPE_SLATER 2
static final int QM_TYPE_UNKNOWN 0
public static final int STATE_DATA_COLORED 3
public static final int STATE_DATA_READ 2
public static final int STATE_INITIALIZED 1
public static final int STATE_UNINITIALIZED 0
static final int SURFACE_ATOMICORBITAL 14
static final int SURFACE_ELLIPSOID2 66
static final int SURFACE_ELLIPSOID3 67
static final int SURFACE_FILE 529
static final int SURFACE_FUNCTIONXY 518
static final int SURFACE_INFO 530
static final int SURFACE_LCAOCARTOON 69
static final int SURFACE_LOBE 68
static final int SURFACE_MEP 304
static final int SURFACE_MOLECULAR 179
static final int SURFACE_MOLECULARORBITAL 301
static final int SURFACE_NOMAP 180
static final int SURFACE_NONE 0
static final int SURFACE_PROPERTY 181
static final int SURFACE_SASURFACE 172
static final int SURFACE_SOLVENT 171
static final int SURFACE_SPHERE 65

org.jmol.jvxl.readers.VoxelReader
static final float ANGSTROMS_PER_BOHR 0.529177188873291f
static final int defaultColorFractionBase 35
static final int defaultColorFractionRange 90
static final float defaultCutoff 0.019999999552965164f
static final int defaultEdgeFractionBase 35
static final int defaultEdgeFractionRange 90
static final float defaultMappedDataMax 1.0f
static final float defaultMappedDataMin 0.0f

org.jmol.minimize.Minimizer
static final int PT_CHARGE 5
static final int PT_CONNECT 6
static final int PT_ELEMENT 2
static final int TOKEN_ELEMENT_AROMATIC 3
static final int TOKEN_ELEMENT_CHARGED 1
static final int TOKEN_ELEMENT_CONNECTED 2
static final int TOKEN_ELEMENT_ONLY 0
static final int TOKEN_ELEMENT_SP 4
static final int TOKEN_ELEMENT_SP2 5

org.jmol.minimize.Util
public static final double DEG_TO_RAD 0.017453292519943295
static final double max_squarable_double 1.0E150
static final double min_squarable_double 1.0E-150
public static final double RAD_TO_DEG 57.29577951308232

org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.Calculations
static final int CALC_ANGLE 1
static final int CALC_DISTANCE 0
static final int CALC_ES 5
static final int CALC_MAX 6
static final int CALC_OOP 3
static final int CALC_TORSION 2
static final int CALC_VDW 4
public static final double DEG_TO_RAD 0.017453292519943295
static final double KCAL_TO_KJ 4.1868
private static final double PI_OVER_2 1.5707963267948966
public static final double RAD_TO_DEG 57.29577951308232
private static final double TWO_PI 6.283185307179586

org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.CalculationsUFF
static final double KCAL22 92.1096
static final double KCAL332 1390.2842991599998
static final double KCAL44 184.2192
static final double KCAL6 25.1208
static final double KCAL644 2696.8016159999997
public static final int PAR_D 3
public static final int PAR_HARD 9
public static final int PAR_R 0
public static final int PAR_RADIUS 10
public static final int PAR_THETA 1
public static final int PAR_U 7
public static final int PAR_V 6
public static final int PAR_X 2
public static final int PAR_XI 8
public static final int PAR_Z 5
public static final int PAR_ZETA 4

org.jmol.minimize.forcefield.ForceField
static final int EANGLE 4
static final int EBOND 2
static final int EELECTROSTATIC 128
static final int ENERGY 1
static final int EOOP 32
static final int ESTRBND 8
static final int ETORSION 16
static final int EVDW 64

org.jmol.modelset.Atom
private static final byte FLAG_MASK 3
private static final byte IS_HETERO_FLAG 2
private static final byte VIBRATION_VECTOR_FLAG 1

org.jmol.modelset.AtomCollection
private static final int minimumPixelSelectionRadius 6
protected static final boolean showRebondTimes true
public static final byte TAINT_COORD 0
private static final byte TAINT_FORMALCHARGE 1
public static final byte TAINT_MAX 8
private static final byte TAINT_OCCUPANCY 2
private static final byte TAINT_PARTIALCHARGE 3
private static final byte TAINT_TEMPERATURE 4
private static final byte TAINT_VALENCE 5
private static final byte TAINT_VANDERWAALS 6
private static final byte TAINT_VIBRATION 7

org.jmol.modelset.BondCollection
private static final int bondGrowthIncrement 250
protected static final int MAX_BONDS_LENGTH_TO_CACHE 5
protected static final int MAX_NUM_TO_CACHE 200

org.jmol.modelset.Group
private static final int INSERTION_CODE_MASK 127
private static final int SEQUENCE_NUMBER_FLAG 128
private static final int SEQUENCE_NUMBER_SHIFT 8

org.jmol.modelset.ModelLoader
private static final int ATOM_GROWTH_INCREMENT 2000
private static final int defaultGroupCount 32

org.jmol.modelset.ModelSet
private static final boolean useRasMolHbondsCalculation true

org.jmol.modelset.Polymer
protected static final int TYPE_AMINO 1
protected static final int TYPE_CARBOHYDRATE 3
protected static final int TYPE_NUCLEIC 2
protected static final int TYPE_OTHER 0

org.jmol.modelsetbio.AlphaPolymer
static final byte CODE_BETA_SHEET 2
static final byte CODE_LEFT_HELIX 3
static final byte CODE_LEFT_TURN 4
static final byte CODE_NADA 0
static final byte CODE_RIGHT_HELIX 1
static final byte CODE_RIGHT_TURN 5
static final byte TAG_HELIX 3
static final byte TAG_NADA 0
static final byte TAG_SHEET 2
static final byte TAG_TURN 1

org.jmol.modelsetbio.AminoMonomer
private static final float beta 0.296705961227417f
private static final byte C 3
private static final byte CA 0
private static final byte N 2
private static final byte O 1
private static final byte OT 4

org.jmol.modelsetbio.AminoPolymer
private static final float maxHbondAlphaDistance 9.0f
private static final float maxHbondAlphaDistance2 81.0f
private static final float minimumHbondDistance2 0.5f
private static final double QConst -27888.0

org.jmol.modelsetbio.NucleicMonomer
private static final byte C2 5
private static final byte C3Pr 22
private static final byte C4 7
private static final byte C5 3
static final byte C6 1
private static final byte C8 10
private static final byte H3T 20
private static final byte H5T 18
private static final byte N1 4
private static final byte N2 17
private static final byte N3 6
private static final byte N4 14
private static final byte N6 16
private static final byte N7 9
private static final byte N9 11
private static final byte NP 15
private static final byte O1P 23
private static final byte O2 8
private static final byte O2P 24
private static final byte O2Pr 2
private static final byte O3Pr 21
private static final byte O4 12
private static final byte O5Pr 19
private static final byte O6 13

org.jmol.modelsetbio.NucleicPolymer
private static final short HBOND_MASK 18432

org.jmol.popup.JmolPopup
private static final boolean dumpList false
private static final boolean forceAwt false
static final int MAX_ITEMS 25
static final int TITLE_MAX_WIDTH 20
static final int UPDATE_ALL 0
static final int UPDATE_CONFIG 1
static final int UPDATE_SHOW 2

org.jmol.quantum.MOCalculation
private static final float ROOT3 1.7320507764816284f

org.jmol.quantum.org.jmol.quantum.QuantumCalculation
protected static final float bohr_per_angstrom 1.8897161483764648f

org.jmol.shape.Axes
private static final float MIN_AXIS_LEN 1.5f

org.jmol.shape.Dots
static final float SURFACE_DISTANCE_FOR_CALCULATION 10.0f

org.jmol.shape.Echo
private static final short COLOR 10
private static final java.lang.String FONTFACE "Serif"
private static final int FONTSIZE 20

org.jmol.shape.Frank
static final java.lang.String defaultFontName "SansSerif"
static final int defaultFontSize 16
static final java.lang.String defaultFontStyle "Bold"
static final int frankMargin 4

org.jmol.shape.Hover
private static final java.lang.String FONTFACE "SansSerif"
private static final int FONTSIZE 12
private static final java.lang.String FONTSTYLE "Plain"

org.jmol.shape.Labels
static final int ALIGN_FLAGS 12
static final int FLAG_OFFSET 8
static final int FLAGS 255
static final int FRONT_FLAG 32
static final int GROUP_FLAG 16
static final int POINTER_FLAGS 3
static final int SCALE_FLAG 64
static final int ZPOS_FLAGS 48

org.jmol.shape.Measures
private static final int measurementGrowthIncrement 16

org.jmol.shape.Mesh
public static final java.lang.String PREVIOUS_MESH_ID "+PREVIOUS_MESH+"
public static final int SEED_COUNT 25

org.jmol.shape.Object2d
protected static final int ALIGN_CENTER 2
public static final int ALIGN_LEFT 1
protected static final int ALIGN_NONE 0
protected static final int ALIGN_RIGHT 3
public static final int POINTER_BACKGROUND 2
public static final int POINTER_NONE 0
public static final int POINTER_ON 1
protected static final int VALIGN_BOTTOM 2
protected static final int VALIGN_MIDDLE 3
protected static final int VALIGN_TOP 1
public static final int VALIGN_XY 0
public static final int VALIGN_XYZ 4

org.jmol.shape.Sticks
private static final int MAX_BOND_CLICK_DISTANCE_SQUARED 100

org.jmol.shapebio.org.jmol.shapebio.BioShape
private static final double eightPiSquared100 7895.6835208714865

org.jmol.shapebio.org.jmol.shapebio.BioShapeRenderer
private static final int ABSOLUTE_MIN_MESH_SIZE 3
private static final int MIN_MESH_RENDER_SIZE 8

org.jmol.shapebio.RocketsRenderer
private static final float MIN_CONE_HEIGHT 0.05000000074505806f

org.jmol.shapespecial.org.jmol.shapespecial.Dipole
static final short DIPOLE_TYPE_ATOMS 2
static final short DIPOLE_TYPE_BOND 3
static final short DIPOLE_TYPE_MOLECULAR 4
static final short DIPOLE_TYPE_POINTS 1
static final short DIPOLE_TYPE_POINTVECTOR 5
static final short DIPOLE_TYPE_UNKNOWN 0

org.jmol.shapespecial.Dipoles
static final short DEFAULT_MAD 5
static final float DEFAULT_OFFSETSIDE 0.4000000059604645f
private static final float E_ANG_PER_DEBYE 0.20819400250911713f

org.jmol.shapespecial.DipolesRenderer
private static final int arrowHeadBase 4
private static final float arrowHeadOffset 0.8999999761581421f
private static final int arrowHeadTip 5
private static final float arrowHeadWidthFactor 2.0f
private static final int center 3
private static final int cross 1
private static final int crossEnd 2
private static final float crossOffset 0.10000000149011612f
private static final float crossWidth 0.03999999910593033f
private static final int cylinderBase 0

org.jmol.shapespecial.Draw
private static final int MAX_OBJECT_CLICK_DISTANCE_SQUARED 100
private static final int PT_BITSET 3
private static final int PT_COORD 1
private static final int PT_IDENTIFIER 2
private static final int PT_MODEL_BASED_POINTS 5
private static final int PT_MODEL_INDEX 4

org.jmol.shapespecial.EllipsoidsRenderer
private static final float toRadians 0.01745329238474369f

org.jmol.shapespecial.Polyhedra
private static final float DEFAULT_DISTANCE_FACTOR 1.850000023841858f
private static final float DEFAULT_FACECENTEROFFSET 0.25f
static final int EDGES_ALL 1
static final int EDGES_FRONT 2
private static final int EDGES_NONE 0
private static final int FACE_COUNT_MAX 147
private static final int MAX_VERTICES 150

org.jmol.shapespecial.VectorsRenderer
static final float arrowHeadOffset -0.20000000298023224f

org.jmol.shapesurface.Pmesh
private static final java.lang.String PMESH_BINARY_MAGIC_NUMBER "PM\u0001\u0000"

org.jmol.smiles.SmilesAtom
public static final java.lang.String CHIRALITY_ALLENE "AL"
public static final java.lang.String CHIRALITY_OCTAHEDRAL "OH"
public static final java.lang.String CHIRALITY_SQUARE_PLANAR "SP"
public static final java.lang.String CHIRALITY_TETRAHEDRAL "TH"
public static final java.lang.String CHIRALITY_TRIGONAL_BIPYRAMIDAL "TB"
public static final java.lang.String DEFAULT_CHIRALITY ""
private static final int INITIAL_BONDS 4

org.jmol.smiles.SmilesBond
public static final char CODE_AROMATIC 58
public static final char CODE_DIRECTIONAL_1 47
public static final char CODE_DIRECTIONAL_2 92
public static final char CODE_DOUBLE 61
public static final char CODE_NONE 46
public static final char CODE_SINGLE 45
public static final char CODE_TRIPLE 35
public static final int TYPE_AROMATIC 4
public static final int TYPE_DIRECTIONAL_1 5
public static final int TYPE_DIRECTIONAL_2 6
public static final int TYPE_DOUBLE 2
public static final int TYPE_NONE 0
public static final int TYPE_SINGLE 1
public static final int TYPE_TRIPLE 3
public static final int TYPE_UNKOWN -1

org.jmol.smiles.SmilesMolecule
private static final int INITIAL_ATOMS 16
private static final int INITIAL_BONDS 16

org.jmol.symmetry.org.jmol.symmetry.PointGroup
private static final int ATOM_COUNT_MAX 100
private static final int c2 16
private static final int c3 17
private static final int c4 18
private static final int c5 19
private static final int c6 20
private static final int c8 22
private static final int firstProper 14
static final int OPERATION_IMPROPER_AXIS 2
static final int OPERATION_INVERSION_CENTER 3
static final int OPERATION_PLANE 0
static final int OPERATION_PROPER_AXIS 1
private static final int s10 10
private static final int s12 12
private static final int s3 3
private static final int s4 4
private static final int s5 5
private static final int s6 6
private static final int s8 8

org.jmol.symmetry.org.jmol.symmetry.SpaceGroup
private static final int SPACE_GROUP_QUERY 9999

org.jmol.symmetry.org.jmol.symmetry.UnitCell
static final float toRadians 0.01745329238474369f

org.jmol.symmetry.org.jmol.symmetry.UnitCell.Data
static final double twoP2 19.739208802178716

org.jmol.util.ColorEncoder
public static final int AMINO 9
public static final int BGYOR 1
public static final int BWR 3
private static final java.lang.String BYELEMENT_JMOL "byelement_jmol"
public static final java.lang.String BYELEMENT_PREFIX "byelement"
private static final java.lang.String BYELEMENT_RASMOL "byelement_rasmol"
private static final java.lang.String BYRESIDUE_AMINO "byresidue_amino"
public static final java.lang.String BYRESIDUE_PREFIX "byresidue"
private static final java.lang.String BYRESIDUE_SHAPELY "byresidue_shapely"
private static final int GRAY -8355712
public static final int HIGH 5
public static final int JMOL 6
public static final int LOW 4
public static final int RASMOL 7
public static final int RESU -11
public static final int ROYGB 0
public static final int RWB 2
public static final int SHAPELY 8
public static final int USER -10

org.jmol.util.CommandHistory
static final int DEFAULT_MAX_SIZE 100
public static final java.lang.String ERROR_FLAG "#??"
public static final java.lang.String NOHISTORYATALL_FLAG "#----"
public static final java.lang.String NOHISTORYLINE_FLAG "#--"

org.jmol.util.org.jmol.util.DCT
private static final int N 8
private static final int NN 64

org.jmol.util.Escape
private static final java.lang.String escapable "\\\\\tt\rr\nn\"\""

org.jmol.util.Logger
public static final int LEVEL_DEBUG 5
public static final int LEVEL_DEBUGHIGH 6
public static final int LEVEL_ERROR 2
public static final int LEVEL_FATAL 1
public static final int LEVEL_INFO 4
public static final int LEVEL_MAX 7
public static final int LEVEL_WARN 3

org.jmol.util.Measure
public static final float radiansPerDegree 0.01745329238474369f

org.jmol.util.TempArray
private static final int freeBytesSize 2
private static final int freePointsSize 6
private static final int freeScreensSize 6

org.jmol.viewer.org.jmol.viewer.Compiler
private static final int ERROR_badArgumentCount 0
private static final int ERROR_badContext 1
private static final int ERROR_commandExpected 2
private static final int ERROR_coordinateExpected 3
private static final int ERROR_endOfCommandUnexpected 4
private static final int ERROR_endOfExpressionExpected 5
private static final int ERROR_identifierOrResidueSpecificationExpected 6
private static final int ERROR_invalidAtomSpecification 7
private static final int ERROR_invalidChainSpecification 8
private static final int ERROR_invalidExpressionToken 9
private static final int ERROR_invalidModelSpecification 10
private static final int ERROR_missingEnd 11
private static final int ERROR_numberExpected 12
private static final int ERROR_numberOrVariableNameExpected 13
private static final int ERROR_residueSpecificationExpected 14
private static final int ERROR_tokenExpected 15
private static final int ERROR_tokenUnexpected 16
private static final int ERROR_unrecognizedExpressionToken 17
private static final int ERROR_unrecognizedParameter 18
private static final int ERROR_unrecognizedToken 19

org.jmol.viewer.org.jmol.viewer.Eval
static final int ERROR_axisExpected 0
static final int ERROR_badArgumentCount 1
static final int ERROR_badMillerIndices 2
static final int ERROR_badRGBColor 3
static final int ERROR_booleanExpected 4
static final int ERROR_booleanOrNumberExpected 5
static final int ERROR_booleanOrWhateverExpected 6
static final int ERROR_colorExpected 7
static final int ERROR_colorOrPaletteRequired 8
static final int ERROR_coordinateOrNameOrExpressionRequired 9
static final int ERROR_drawObjectNotDefined 10
static final int ERROR_endOfStatementUnexpected 11
static final int ERROR_expressionExpected 12
static final int ERROR_expressionOrIntegerExpected 13
static final int ERROR_filenameExpected 14
static final int ERROR_fileNotFoundException 15
static final int ERROR_incompatibleArguments 16
static final int ERROR_insufficientArguments 17
static final int ERROR_integerExpected 18
static final int ERROR_integerOutOfRange 19
static final int ERROR_invalidArgument 20
static final int ERROR_invalidParameterOrder 21
static final int ERROR_keywordExpected 22
static final int ERROR_multipleModelsNotOK 23
static final int ERROR_noUnitCell 24
static final int ERROR_numberExpected 25
static final int ERROR_numberMustBe 26
static final int ERROR_numberOutOfRange 27
static final int ERROR_objectNameExpected 28
static final int ERROR_propertyNameExpected 29
static final int ERROR_spaceGroupNotFound 30
static final int ERROR_stringExpected 31
static final int ERROR_stringOrIdentifierExpected 32
static final int ERROR_tooManyScriptLevels 33
static final int ERROR_unrecognizedAtomProperty 34
static final int ERROR_unrecognizedBondProperty 35
static final int ERROR_unrecognizedCommand 36
static final int ERROR_unrecognizedExpression 37
static final int ERROR_unrecognizedObject 38
static final int ERROR_unrecognizedParameter 39
static final int ERROR_unrecognizedParameterWarning 40
static final int ERROR_unrecognizedShowParameter 41
static final int ERROR_what 42
private static final java.lang.String EXPRESSION_KEY "e_x_p_r_e_s_s_i_o_n"
static final java.lang.String SCRIPT_COMPLETED "Script completed"
private static final int scriptLevelMax 10

org.jmol.viewer.FileManager
private static final int URL_LOCAL 3

org.jmol.viewer.JmolConstants
private static final java.lang.String allCarbohydrates ",[AFL],[AGC],[AHR],[ARA],[ARB],[BDF],[BDR],[BGC],[BMA],[FCA],[FCB],[FRU],[FUC],[FUL],[GAL],[GLA],[GLB],[GLC],[GUP],[LXC],[MAN],[RAA],[RAM],[RIB],[RIP],[XYP],[XYS],[CBI],[CT3],[CTR],[CTT],[LAT],[MAB],[MAL],[MLR],[MTT],[SUC],[TRE],[ASF],[GCU],[MTL],[NAG],[NAM],[RHA],[SOR],[XYL]"
public static final float ANGSTROMS_PER_BOHR 0.529177188873291f
public static final int argbShapelyBackbone -4671304
public static final int argbShapelyDefault -65281
public static final int argbShapelySpecial -10616738
public static final int ATOM_IN_MODEL 1
public static final int ATOM_SLABBED 2
public static final byte ATOMID_ALPHA_CARBON 2
public static final int ATOMID_ALPHA_ONLY_MASK 4
public static final byte ATOMID_AMINO_NITROGEN 1
private static final int ATOMID_BACKBONE_MIN 64
public static final byte ATOMID_C2 33
public static final byte ATOMID_C3_PRIME 9
public static final byte ATOMID_C4 35
public static final byte ATOMID_C5 36
public static final byte ATOMID_C5M 45
public static final byte ATOMID_C6 37
public static final byte ATOMID_C7 49
public static final byte ATOMID_C8 40
public static final byte ATOMID_CARBONYL_CARBON 3
public static final byte ATOMID_CARBONYL_OXYGEN 4
public static final int ATOMID_DISTINGUISHING_ATOM_MAX 14
public static final byte ATOMID_H3T_TERMINUS 88
public static final byte ATOMID_H5T_TERMINUS 72
public static final byte ATOMID_HO3_PRIME 89
public static final byte ATOMID_HO5_PRIME 90
public static final byte ATOMID_N1 32
public static final byte ATOMID_N2 43
public static final byte ATOMID_N3 34
public static final byte ATOMID_N4 42
public static final byte ATOMID_N6 44
public static final byte ATOMID_N7 39
public static final byte ATOMID_N9 41
public static final int ATOMID_NUCLEIC_MASK 8128
public static final byte ATOMID_NUCLEIC_PHOSPHORUS 13
public static final byte ATOMID_O1 5
public static final byte ATOMID_O1P 74
public static final byte ATOMID_O2 38
public static final byte ATOMID_O2_PRIME 79
public static final byte ATOMID_O2P 76
public static final byte ATOMID_O3_PRIME 10
public static final byte ATOMID_O4 47
public static final byte ATOMID_O5_PRIME 6
public static final byte ATOMID_O5T_TERMINUS 73
public static final byte ATOMID_O6 46
public static final byte ATOMID_OP1 75
public static final byte ATOMID_OP2 77
public static final int ATOMID_PHOSPHORUS_ONLY_MASK 8192
public static final int ATOMID_PROTEIN_MASK 14
public static final byte ATOMID_S4 48
public static final byte ATOMID_TERMINATING_OXT 64
public static final int AXES_DEFAULT_FONTSIZE 14
public static final int AXES_MODE_BOUNDBOX 0
public static final int AXES_MODE_MOLECULAR 1
public static final int AXES_MODE_UNITCELL 2
public static final int BACKLIT 67108870
public static final short BOND_AROMATIC 515
public static final short BOND_AROMATIC_DOUBLE 514
public static final short BOND_AROMATIC_MASK 512
public static final short BOND_AROMATIC_SINGLE 513
public static final short BOND_COVALENT_DOUBLE 2
public static final short BOND_COVALENT_MASK 1023
public static final short BOND_COVALENT_QUADRUPLE 4
public static final short BOND_COVALENT_SINGLE 1
public static final short BOND_COVALENT_TRIPLE 3
public static final short BOND_H_CALC 4096
public static final short BOND_H_CALC_MASK 28672
public static final short BOND_H_MINUS_3 14336
public static final short BOND_H_MINUS_4 16384
public static final short BOND_H_NUCLEOTIDE 18432
public static final short BOND_H_PLUS_2 6144
public static final short BOND_H_PLUS_3 8192
public static final short BOND_H_PLUS_4 10240
public static final short BOND_H_PLUS_5 12288
public static final short BOND_H_REGULAR 2048
public static final short BOND_HBOND_SHIFT 11
public static final short BOND_HYDROGEN_MASK 30720
public static final short BOND_NEW -32768
public static final short BOND_ORDER_ANY 16383
public static final short BOND_ORDER_NULL 32767
public static final short BOND_ORDER_UNSPECIFIED 7
public static final short BOND_PARTIAL_MASK 224
public static final short BOND_PARTIAL01 33
public static final short BOND_PARTIAL12 66
public static final short BOND_PARTIAL23 97
public static final short BOND_PARTIAL32 100
public static final short BOND_STEREO_FAR 1026
public static final short BOND_STEREO_MASK 1024
public static final short BOND_STEREO_NEAR 1025
public static final short BOND_SULFUR_MASK 256
public static final int CALLBACK_ANIMFRAME 0
public static final int CALLBACK_COUNT 12
public static final int CALLBACK_ECHO 1
public static final int CALLBACK_EVAL 2
public static final int CALLBACK_HOVER 3
public static final int CALLBACK_LOADSTRUCT 4
public static final int CALLBACK_MEASURE 5
public static final int CALLBACK_MESSAGE 6
public static final int CALLBACK_MINIMIZATION 7
public static final int CALLBACK_PICK 8
public static final int CALLBACK_RESIZE 9
public static final int CALLBACK_SCRIPT 10
public static final int CALLBACK_SYNC 11
public static final java.lang.String CLASSBASE_OPTIONS "org.jmol."
public static final int CONNECT_AUTO_BOND 4
public static final int CONNECT_CREATE_ONLY 2
public static final int CONNECT_DELETE_BONDS 0
public static final int CONNECT_IDENTIFY_ONLY 5
public static final int CONNECT_MODIFY_ONLY 1
public static final int CONNECT_MODIFY_OR_CREATE 3
public static final java.lang.String copyright "(C) 2008 Jmol Development"
public static final java.lang.String cvsDate "$Date: 2008-11-24 14:39:37 +0200 (Mon, 24 Nov 2008) $"
public static final short DEFAULT_BOND_MILLIANGSTROM_RADIUS 150
public static final float DEFAULT_BOND_RADIUS 0.15000000596046448f
public static final float DEFAULT_BOND_TOLERANCE 0.44999998807907104f
public static final java.lang.String DEFAULT_FONTFACE "SansSerif"
public static final java.lang.String DEFAULT_FONTSTYLE "Plain"
public static final java.lang.String DEFAULT_HELP_PATH "http://www.stolaf.edu/academics/chemapps/jmol/docs/index.htm"
public static final float DEFAULT_MAX_CONNECT_DISTANCE 1.0E8f
public static final float DEFAULT_MIN_BOND_DISTANCE 0.4000000059604645f
public static final float DEFAULT_MIN_CONNECT_DISTANCE 0.10000000149011612f
public static final int DEFAULT_PERCENT_VDW_ATOM 20
public static final int DRAW_ARC 19
public static final int DRAW_ARROW 15
public static final int DRAW_CIRCLE 16
public static final int DRAW_CIRCULARPLANE 18
public static final int DRAW_CURVE 17
public static final int DRAW_CYLINDER 5
public static final int DRAW_LINE 2
public static final int DRAW_MULTIPLE -1
public static final int DRAW_NONE 0
public static final int DRAW_PLANE 4
public static final int DRAW_POINT 1
public static final int DRAW_TRIANGLE 3
public static final java.lang.String EMBEDDED_SCRIPT_TAG "**** Jmol Embedded Script ****"
public static final java.lang.String EXPORT_DRIVER_LIST "Maya;Vrml;Povray"
public static final int firstIsotope 4
public static final int FORMAL_CHARGE_INDEX_WHITE 4
public static final int FORMAL_CHARGE_MAX 7
public static final int FORMAL_CHARGE_MIN -4
public static final int FORMAL_CHARGE_RANGE_SIZE 12
public static final int FRONTLIT 67108883
public static final int FULLYLIT 67108885
public static final int GROUPID_AMINO_MAX 24
public static final int GROUPID_PROLINE 15
private static final int GROUPID_SULPHATE 46
private static final int GROUPID_WATER 42
public static final int INFO_A 0
public static final int INFO_ALPHA 3
public static final int INFO_B 1
public static final int INFO_BETA 4
public static final int INFO_C 2
public static final int INFO_GAMMA 5
public static final int JMOL_DATA_OTHER 2
public static final int JMOL_DATA_QUATERNION 1
public static final int JMOL_DATA_RAMACHANDRAN 0
public static final int LABEL_DEFAULT_FONTSIZE 13
public static final int LABEL_DEFAULT_X_OFFSET 4
public static final int LABEL_DEFAULT_Y_OFFSET 4
public static final int LABEL_MAXIMUM_FONTSIZE 63
public static final int LABEL_MINIMUM_FONTSIZE 6
public static final short madMultipleBondSmallMaximum 500
public static final int MAXIMUM_AUTO_BOND_COUNT 20
public static final int MEASURE_DEFAULT_FONTSIZE 15
public static final int MOUSE_DELETE 4
public static final int MOUSE_MEASURE 5
public static final int MOUSE_NONE -1
public static final int MOUSE_PICK 3
public static final int MOUSE_POPUP_MENU 8
public static final int MOUSE_ROTATE 0
public static final int MOUSE_ROTATE_Z 6
public static final int MOUSE_SLAB_PLANE 7
public static final int MOUSE_XLATE 2
public static final int MOUSE_ZOOM 1
public static final byte MULTIBOND_ALWAYS 3
public static final byte MULTIBOND_NEVER 0
public static final byte MULTIBOND_NOTSMALL 2
public static final byte MULTIBOND_WIREFRAME 1
private static final java.lang.String naturalIsotopes "1H,12C,14N,"
public static final boolean officialRelease false
public static final byte PALETTE_ALTLOC 14
public static final byte PALETTE_AMINO 8
public static final byte PALETTE_CHAIN 10
public static final byte PALETTE_CPK 1
public static final byte PALETTE_FIXEDTEMP 5
public static final byte PALETTE_FORMAL_CHARGE 3
public static final byte PALETTE_GROUP 75
public static final byte PALETTE_INSERTION 15
public static final byte PALETTE_JMOL 16
public static final byte PALETTE_MOLECULE 77
public static final byte PALETTE_MONOMER 76
public static final byte PALETTE_NONE 0
public static final byte PALETTE_PARTIAL_CHARGE 2
public static final byte PALETTE_PROPERTY 83
public static final byte PALETTE_RASMOL 17
public static final byte PALETTE_SHAPELY 9
public static final byte PALETTE_STATIC 63
public static final byte PALETTE_STRAIGHTNESS 85
public static final byte PALETTE_STRUCTURE 7
public static final byte PALETTE_SURFACE 70
public static final byte PALETTE_TEMP 68
public static final byte PALETTE_TYPE 18
public static final byte PALETTE_UNKNOWN -1
public static final byte PALETTE_VARIABLE 84
public static final byte PALETTE_VOLATILE 64
public static final int PARTIAL_CHARGE_RANGE_SIZE 31
public static final int PICKING_CENTER 3
public static final int PICKING_DRAW 4
public static final int PICKING_IDENT 1
public static final int PICKING_LABEL 2
public static final int PICKING_MEASURE 15
public static final int PICKING_MEASURE_ANGLE 17
public static final int PICKING_MEASURE_DISTANCE 16
public static final int PICKING_MEASURE_TORSION 18
public static final int PICKING_NAVIGATE 19
public static final int PICKING_OFF 0
public static final int PICKING_SELECT_ATOM 8
public static final int PICKING_SELECT_CHAIN 10
public static final int PICKING_SELECT_DRAG 14
public static final int PICKING_SELECT_ELEMENT 13
public static final int PICKING_SELECT_GROUP 9
public static final int PICKING_SELECT_MOLECULE 11
public static final int PICKING_SELECT_SITE 12
public static final int PICKING_SPIN 5
public static final int PICKINGSTYLE_MEASURE_OFF 5
public static final int PICKINGSTYLE_MEASURE_ON 4
public static final int PICKINGSTYLE_SELECT_CHIME 0
public static final int PICKINGSTYLE_SELECT_DRAG 3
public static final int PICKINGSTYLE_SELECT_JMOL 0
public static final int PICKINGSTYLE_SELECT_PFAAT 2
public static final int PICKINGSTYLE_SELECT_RASMOL 1
public static final java.lang.String PREVIOUS_MESH_ID "+PREVIOUS_MESH+"
public static final byte PROTEIN_STRUCTURE_DNA 4
public static final byte PROTEIN_STRUCTURE_HELIX 3
public static final byte PROTEIN_STRUCTURE_NONE 0
public static final byte PROTEIN_STRUCTURE_RNA 5
public static final byte PROTEIN_STRUCTURE_SHEET 2
public static final byte PROTEIN_STRUCTURE_TURN 1
public static final int SHAPE_AXES 27
public static final int SHAPE_BACKBONE 9
public static final int SHAPE_BALLS 0
public static final int SHAPE_BBCAGE 28
public static final int SHAPE_CARTOON 11
public static final int SHAPE_DIPOLES 16
public static final int SHAPE_DOTS 6
public static final int SHAPE_DRAW 21
public static final int SHAPE_ECHO 26
public static final int SHAPE_ELLIPSOIDS 19
public static final int SHAPE_FRANK 31
public static final int SHAPE_GEOSURFACE 18
public static final int SHAPE_HALOS 8
public static final int SHAPE_HOVER 30
public static final int SHAPE_HSTICKS 2
public static final int SHAPE_ISOSURFACE 22
public static final int SHAPE_LABELS 4
public static final int SHAPE_LCAOCARTOON 23
public static final int SHAPE_MAX 32
public static final int SHAPE_MAX_HAS_ID 27
public static final int SHAPE_MAX_MESH_COLLECTION 26
public static final int SHAPE_MAX_SECONDARY 16
public static final int SHAPE_MAX_SIZE_ZERO_ON_RESTRICT 20
public static final int SHAPE_MAX_SPECIAL 22
public static final int SHAPE_MAX_SURFACE 26
public static final int SHAPE_MEASURES 5
public static final int SHAPE_MESHRIBBON 13
public static final int SHAPE_MIN_HAS_ID 21
public static final int SHAPE_MIN_MESH_COLLECTION 21
public static final int SHAPE_MIN_SECONDARY 9
public static final int SHAPE_MIN_SPECIAL 16
public static final int SHAPE_MIN_SURFACE 22
public static final int SHAPE_MO 24
public static final int SHAPE_PMESH 25
public static final int SHAPE_POLYHEDRA 20
public static final int SHAPE_RIBBONS 14
public static final int SHAPE_ROCKETS 15
public static final int SHAPE_SSSTICKS 3
public static final int SHAPE_STARS 7
public static final int SHAPE_STICKS 1
public static final int SHAPE_STRANDS 12
public static final int SHAPE_TRACE 10
public static final int SHAPE_UCCAGE 29
public static final int SHAPE_VECTORS 17
public static final int SHELL_D_CARTESIAN 3
public static final int SHELL_D_SPHERICAL 4
public static final int SHELL_F_CARTESIAN 5
public static final int SHELL_F_SPHERICAL 6
public static final int SHELL_L 2
public static final int SHELL_P 1
public static final int SHELL_S 0
public static final int SHELL_SP 2
static final int STEREO_CUSTOM 5
static final int STEREO_DOUBLE 1
static final int STEREO_NONE 0
static final int STEREO_REDBLUE 3
static final int STEREO_REDCYAN 2
static final int STEREO_REDGREEN 4
static final int STEREO_UNKNOWN -1
public static final int VDW_BABEL 1
public static final int VDW_JMOL 0
public static final int VDW_RASMOL 2
public static final int VDW_USER 3
public static final int XY_ZTOP 100

org.jmol.viewer.MouseManager
static final int ALT 8
public static final int ALT_LEFT 24
public static final int ALT_SHIFT_LEFT 25
public static final int BUTTON_MODIFIER_MASK 31
static final int CTRL 2
static final int CTRL_ALT_LEFT 26
static final int CTRL_ALT_SHIFT_LEFT 27
static final int CTRL_ALT_SHIFT_RIGHT 15
static final int CTRL_LEFT 18
static final int CTRL_MIDDLE 10
static final int CTRL_RIGHT 6
static final int CTRL_SHIFT 3
static final int CTRL_SHIFT_LEFT 19
static final int CTRL_SHIFT_MIDDLE 11
static final int CTRL_SHIFT_RIGHT 7
static final int LEFT 16
static final int LEFT_MIDDLE_RIGHT 28
static final long MAX_DOUBLE_CLICK_MILLIS 700L
static final int MIDDLE 8
static final int MIDDLE_RIGHT 12
static final int RIGHT 4
public static final int SHIFT 1
public static final int SHIFT_LEFT 17
static final int SHIFT_MIDDLE 9
static final int SHIFT_RIGHT 5
static final float wheelClickFractionDown 0.8695652484893799f
static final float wheelClickFractionUp 1.149999976158142f

org.jmol.viewer.org.jmol.viewer.PropertyManager
private static final java.lang.String atomExpression "<atom selection>"
private static final int PROP_ANIMATION_INFO 5
private static final int PROP_APPLET_INFO 0
private static final int PROP_ATOM_INFO 14
private static final int PROP_ATOM_LIST 13
private static final int PROP_AUXILIARY_INFO 24
private static final int PROP_BOND_INFO 15
private static final int PROP_BOUNDBOX_INFO 25
private static final int PROP_CENTER_INFO 10
private static final int PROP_CHAIN_INFO 16
private static final int PROP_COUNT 32
private static final int PROP_DATA_INFO 26
private static final int PROP_EVALUATE 28
private static final int PROP_EXTRACT_MODEL 20
private static final int PROP_FILECONTENTS 4
static final int PROP_FILECONTENTS_PATH 3
private static final int PROP_FILEHEADER 2
private static final int PROP_FILENAME 1
private static final int PROP_IMAGE 27
private static final int PROP_JMOL_STATUS 21
private static final int PROP_JMOL_VIEWER 22
private static final int PROP_MEASUREMENT_INFO 9
private static final int PROP_MENU 29
private static final int PROP_MESSAGE_QUEUE 23
private static final int PROP_MINIMIZATION_INFO 30
private static final int PROP_MODEL_INFO 6
private static final int PROP_MOLECULE_INFO 18
private static final int PROP_ORIENTATION_INFO 11
private static final int PROP_POINTGROUP_INFO 31
private static final int PROP_POLYMER_INFO 17
private static final int PROP_SHAPE_INFO 8
private static final int PROP_STATE_INFO 19
private static final int PROP_TRANSFORM_INFO 12

org.jmol.viewer.org.jmol.viewer.RepaintManager
static final int ANIMATION_LOOP 1
static final int ANIMATION_ONCE 0
static final int ANIMATION_PALINDROME 2

org.jmol.viewer.org.jmol.viewer.SelectionManager
private static final int FALSE 0
private static final int TRUE 1
private static final int UNKNOWN -1

org.jmol.viewer.StateManager
public static final int OBJ_AXIS1 1
public static final int OBJ_AXIS2 2
public static final int OBJ_AXIS3 3
public static final int OBJ_BACKGROUND 0
public static final int OBJ_BOUNDBOX 4
public static final int OBJ_FRANK 6
public static final int OBJ_MAX 7
public static final int OBJ_UNITCELL 5
private static final java.lang.String objectNameList "background axis1 axis2 axis3 boundbox unitcell frank "

org.jmol.viewer.org.jmol.viewer.StateManager.GlobalSettings
static final java.lang.String unreportedProperties ";ambientpercent;animationfps;antialiasdisplay;antialiasimages;antialiastranslucent;appendnew;axescolor;axesposition;axesmolecular;axesorientationrasmol;axesunitcell;axeswindow;axis1color;axis2color;axis3color;backgroundcolor;backgroundmodel;bondsymmetryatoms;boundboxcolor;cameradepth;debugscript;defaultlatttice;defaults;diffusepercent;exportdrivers;fontscaling;language;loglevel;measureStyleChime;minimizationsteps;minimizationrefresh;minimizationcriterion;navigationmode;perspectivedepth;visualrange;perspectivemodel;refreshing;rotationradius;showaxes;showaxis1;showaxis2;showaxis3;showboundbox;showfrank;showunitcell;slabenabled;specular;specularexponent;specularpercent;specularpower;stateversion;statusreporting;stereo;stereostate;unitcellcolor;windowcentered;zerobasedxyzrasmol;zoomenabled;;scriptqueue;scriptreportinglevel;syncscript;syncmouse;currentlocalpath;ambient;bonds;colorrasmol;diffuse;frank;hetero;hidenotselected;hoverlabel;hydrogen;languagetranslation;measurementunits;navigationdepth;navigationslab;picking;pickingstyle;propertycolorschemeoverload;radius;rgbblue;rgbgreen;rgbred;scaleangstromsperinch;selectionhalos;showscript;showselections;solvent;strandcount;spinx;spiny;spinz;spinfps;animframecallback;echocallback;evalcallback;loadstructcallback;measurecallback;messagecallback;minimizationcallback;hovercallback;resizecallback;pickcallback;scriptcallback;synccallback;undo;"

org.jmol.viewer.org.jmol.viewer.StatusManager
static final int SYNC_DISABLE 3
static final int SYNC_DRIVER 1
static final int SYNC_ENABLE 4
static final int SYNC_OFF 0
static final int SYNC_SLAVE 2

org.jmol.viewer.Token
static final int absolute 67108865
static final int add 15729156
public static final int adpmax 7340046
public static final int adpmin 7340047
static final int all 1048579
static final int altloc 1048580
public static final int ambient 134217729
static final int amino 34603009
static final int angle 9439233
static final int animation 4097
static final int array 9437185
static final int atomExpressionCommand 12288
static final int atomID 3145730
static final int atomIndex 3145732
public static final int atomno 3145729
static final int atomproperty 3145728
public static final int atoms 7340033
public static final int atomX 3146112
public static final int atomY 3146113
public static final int atomZ 3146114
static final int average 67108866
public static final int axes 134746114
static final int axis 67108867
static final int axisangle 9439238
static final int babel 67108868
static final int back 67108869
static final int backbone 35131395
static final int background 134221828
public static final int backlit 67108870
public static final int bitset 67108871
static final int bondcount 3145731
static final int bondmode 134217730
static final int bondorder 4101
public static final int bonds 141557762
static final int bondset 67108872
static final int bottom 67108873
public static final int boundbox 142086157
public static final int branch 1048581
static final int breakcmd 364551
static final int calculate 4102
public static final int carbohydrate 34603029
static final int cartoon 528391
public static final int cell 3145733
static final int center 12289
static final int centerAt 4104
public static final int chain 1048582
static final int clear 67108874
static final int clickable 34603030
static final int clipboard 67108875
static final int colon 1048583
public static final int color 141562115
static final int comma 17825808
public static final int command 4096
static final int comparator 17826048
static final int comparefloatx100 128
static final int configuration 4105
public static final int connect 4106
public static final int connected 9439746
static final int console 528395
static final int constraint 67108876
static final int continuecmd 364552
static final int coord 1048584
static final int cos 9437701
public static final int cross 9438210
static final int data 9443330
static final int decimal 3
static final int defaultColors 134217738
static final int defaultON 524288
static final int define 135278594
static final int delay 528396
public static final int delete 12291
static final int depth 528397
static final int diffuse 134217740
static final int dipole 4110
static final int direction 67108877
static final int displacement 67108878
static final int display 134230020
static final int displayed 34603031
static final int distance 15729665
static final int div 15729159
static final int divide 17825920
public static final int dna 34603010
static final int dollarsign 1048585
static final int dot 1048586
public static final int dots 528399
static final int dotted 67108879
public static final int draw 4112
static final int echo 134238209
public static final int element 3145734
public static final int elemno 3145735
static final int ellipsoid 528401
static final int elsecmd 364547
static final int elseif 102402
static final int end 233481
static final int endifcmd 364548
static final int exit 266258
static final int expression 1048576
static final int expressionBegin 1048577
static final int expressionEnd 1048578
static final int file 3149832
public static final int fill 67108880
static final int find 15729155
static final int fixedtemp 67108881
static final int flowCommand 102400
static final int font 4115
static final int fontsize 134217731
static final int forcmd 102405
public static final int formalCharge 137363721
public static final int fracX 3146115
public static final int fracXyz 7340298
public static final int fracY 3146116
public static final int fracZ 3146117
static final int frame 4116
static final int frank 134746133
public static final int front 67108882
public static final int frontlit 67108883
public static final int frontonly 67108884
public static final int fullylit 67108885
static final int function 9670657
static final int geosurface 528406
static final int getproperty 9441282
static final int gotocmd 20503
public static final int group 1048587
static final int groupID 3145738
static final int halo 528408
static final int hbond 135794713
static final int help 20482
public static final int hetero 168820739
static final int hidden 34603032
static final int hide 12293
static final int history 134221850
static final int hover 544771
public static final int hydrogen 168820740
public static final int identifier 1
static final int identify 7340036
static final int ifcmd 102401
static final int image 67108985
static final int implicitStringCommand 20480
public static final int info 67108986
static final int initialize 266267
static final int insertion 1048588
static final int integer 2
static final int invertSelected 4124
static final int ionic 67108886
public static final int isaromatic 1048589
static final int isosurface 4125
static final int javascript 9458179
static final int jmol 67108887
static final int join 15729153
private static final int keyword 9
static final int label 150491656
static final int last 67108888
static final int lcaocartoon 4126
static final int left 67108889
static final int leftbrace 1048590
static final int leftdivide 17825923
static final int leftparen 17825792
static final int leftsquare 17825824
static final int length 7340037
static final int lines 7340038
static final int list 6
static final int load 9441793
static final int loop 528415
static final int mathExpressionCommand 36864
static final int mathfunc 9437184
static final int mathop 17825792
static final int mathproperty 7340032
static final int max 64
static final int mep 67108890
public static final int mesh 67108891
static final int meshRibbon 528416
static final int message 20484
static final int min 32
static final int minimize 4129
static final int minmaxmask 96
static final int minus 17825904
static final int misc 67108864
static final int mo 4130
static final int mode 67108892
public static final int model 3149837
public static final int molecule 3145742
static final int monitor 135794723
static final int monomer 67108893
static final int move 4132
static final int moveto 4133
static final int mul 15729158
static final int nada 0
static final int navigate 4134
static final int next 67108894
static final int noArgs 262144
public static final int nodots 67108895
static final int noeval 131072
public static final int nofill 67108896
public static final int nomesh 67108897
static final int none 1048591
static final int normal 67108898
public static final int notfrontonly 67108899
public static final int notriangles 67108900
public static final int nucleic 34603013
public static final int occupancy 3145999
public static final int off 1048592
public static final int on 1048593
static final int only 67109000
static final int opAnd 17825856
static final int opaque 67108901
public static final int opEQ 17826148
static final int opGE 17826145
static final int opGT 17826144
static final int opLE 17826146
static final int opLT 17826147
static final int opNE 17826149
static final int opNot 17825872
static final int opOr 17825840
static final int opToggle 17825842
static final int opXor 17825841
static final int orientation 67108902
public static final int partialCharge 3146118
static final int pause 20485
static final int pdbheader 67108903
public static final int percent 17825922
static final int phi 3145863
static final int picking 134217732
static final int pickingStyle 134217741
static final int plane 9439235
static final int play 67108904
static final int playrev 67108905
static final int plus 17825905
static final int pmesh 4135
static final int point 9439236
public static final int point3f 7
public static final int point4f 8
static final int pointgroup 67109275
static final int polyhedra 4136
static final int polymer 67108906
static final int polymerLength 3145744
static final int predefinedset 34603008
static final int prev 67108907
static final int print 36865
static final int property 141558028
static final int propselector 17825953
public static final int protein 34603014
static final int psi 3145864
public static final int purine 34603015
public static final int pyrimidine 34603016
static final int quaternion 9443333
static final int quit 266281
static final int qw 67108931
static final int radius 137363473
static final int ramachandran 1052714
static final int random 9438209
static final int range 67108908
static final int rasmol 67108909
static final int refresh 266283
static final int replace 15729667
static final int reset 4140
public static final int residue 67108910
static final int resno 3145746
static final int restore 4141
static final int restrict 12294
static final int resume 67108911
static final int returncmd 36866
static final int rewind 67108912
static final int ribbon 528430
static final int right 67108913
static final int rightbrace 1048594
static final int rightparen 17825793
static final int rightsquare 17825825
public static final int rna 34603017
static final int rocket 528431
static final int rotate 528432
static final int rotateSelected 4145
static final int rotation 67108914
static final int rubberband 67108915
static final int sasurface 67108916
static final int save 4146
static final int scale 67108917
static final int scale3d 134217739
static final int script 9442307
static final int select 9451009
public static final int selected 34603018
static final int selectionHalo 134746163
static final int semicolon 1048595
static final int seqcode 5
public static final int sequence 1048596
static final int set 36867
static final int setparam 134217728
static final int settable 256
static final int shape 67108918
static final int shapely 67108919
static final int show 4148
public static final int sidechain 34603020
static final int sin 9437700
public static final int site 3145747
static final int size 7340039
static final int slab 528437
static final int solid 67108920
static final int solvent 168820747
static final int spacefill 528438
static final int spacegroup 67108921
public static final int spec_alternate 1048607
public static final int spec_atom 1048608
public static final int spec_chain 1048609
public static final int spec_model 1048610
static final int spec_model2 1048611
public static final int spec_name_pattern 1048612
public static final int spec_resid 1048613
public static final int spec_seqcode 1048614
public static final int spec_seqcode_range 1048615
static final int specexponent 134217736
public static final int specialposition 34603033
static final int specpercent 134217734
static final int specpower 134217735
static final int specular 134217733
static final int spin 134746167
static final int split 15729152
static final int sqrt 9437702
static final int ssbond 134746168
static final int star 528441
static final int state 67108922
static final int stereo 528442
public static final int straightness 3145865
static final int strands 134746171
public static final int string 4
public static final int structure 3149845
static final int sub 15729157
static final int subset 34615303
static final int substructure 9437698
static final int surface 34603021
static final int surfacedistance 3145866
public static final int symmetry 34603034
static final int symop 3145750
static final int sync 4156
public static final int temperature 3146123
static final int thismodel 34603022
static final int times 17825921
static final int top 67108923
static final int torsion 67108924
static final int trace 528445
static final int transform 67108925
static final int translate 4158
static final int translateSelected 4159
static final int translation 67108926
public static final int translucent 67108927
static final int transparent 134217737
public static final int triangles 67108928
static final int trim 15729154
static final int type 7340040
static final int unaryMinus 17825936
public static final int unitcell 169349184
static final int url 67108929
static final int user 67108930
public static final int valence 3146008
public static final int vanderwaals 3146007
static final int var 134385668
static final int vector 4161
static final int vibration 4162
public static final int vibX 3146124
public static final int vibXyz 7340299
public static final int vibY 3146125
public static final int vibZ 3146126
static final int visible 34603035
static final int whilecmd 102406
public static final int wireframe 528451
static final int within 9439745
static final int write 9441283
public static final int xyz 7340297
static final int zap 12296
static final int zoom 4164
static final int zoomTo 4165

org.jmol.viewer.org.jmol.viewer.TransformManager
static final int DEFAULT_STEREO_DEGREES -5
static final float degreesPerRadian 57.295780181884766f
static final int MAXIMUM_ZOOM_PERCENTAGE 200000
static final int MAXIMUM_ZOOM_PERSPECTIVE_DEPTH 10000
static final float radiansPerDegree 0.01745329238474369f
static final float twoPI 6.2831854820251465f

org.jmol.viewer.org.jmol.viewer.TransformManager11
private static final int NAV_MODE_NEWXY 2
private static final int NAV_MODE_NEWXYZ 3
private static final int NAV_MODE_NEWZ 4
private static final int NAV_MODE_NONE 0
private static final int NAV_MODE_RESET 1
private static final int NAV_MODE_ZOOMED -1

org.jmol.viewer.Viewer
public static final int CURSOR_CROSSHAIR 2
public static final int CURSOR_DEFAULT 0
public static final int CURSOR_HAND 1
public static final int CURSOR_MOVE 3
public static final int CURSOR_WAIT 4
static final java.lang.String STATE_VERSION_STAMP "# Jmol state version "

org.openscience.*

org.openscience.jmol.app.AtomSetChooser
private static final float AMPLITUDE_MAX 1.0f
private static final float AMPLITUDE_PRECISION 0.009999999776482582f
private static final float AMPLITUDE_VALUE 0.5f
static final java.lang.String COLLECTION "collection"
static final java.lang.String FF "ff"
private static final int FPS_MAX 30
static final java.lang.String NEXT "next"
static final java.lang.String PAUSE "pause"
private static final float PERIOD_MAX 1.0f
private static final float PERIOD_PRECISION 0.0010000000474974513f
private static final float PERIOD_VALUE 0.5f
static final java.lang.String PLAY "play"
static final java.lang.String PREVIOUS "prev"
private static final int RADIUS_MAX 19
private static final int RADIUS_VALUE 3
static final java.lang.String REWIND "rewind"
static final java.lang.String SAVE "save"
private static final float SCALE_MAX 2.0f
private static final float SCALE_PRECISION 0.009999999776482582f
private static final float SCALE_VALUE 1.0f
static final java.lang.String VECTOR "vector"

org.openscience.jmol.app.FileDropper
public static final java.lang.String FD_PROPERTY_FILENAME "filename"
public static final java.lang.String FD_PROPERTY_INLINE "inline"

org.openscience.jmol.app.Jmol
private static final java.lang.String aboutAction "about"
private static final java.lang.String atomsetchooserAction "atomsetchooser"
public static final java.lang.String chemFileProperty "chemFile"
private static final java.lang.String closeAction "close"
private static final java.lang.String CONSOLE_WINDOW_NAME "Console"
private static final java.lang.String copyImageActionProperty "copyImage"
private static final java.lang.String copyScriptActionProperty "copyScript"
private static final java.lang.String exitAction "exit"
private static final java.lang.String exportActionProperty "export"
private static final java.lang.String FILE_OPEN_WINDOW_NAME "FileOpen"
private static final java.lang.String JMOL_WINDOW_NAME "Jmol"
private static final java.lang.String newAction "new"
private static final java.lang.String newwinAction "newwin"
private static final java.lang.String openAction "open"
private static final java.lang.String openurlAction "openurl"
private static final java.lang.String pasteClipboardActionProperty "pasteClipboard"
private static final java.lang.String povrayActionProperty "povray"
private static final java.lang.String printActionProperty "print"
private static final java.lang.String recentFilesAction "recentFiles"
private static final java.lang.String SCRIPT_WINDOW_NAME "ScriptWindow"
private static final java.lang.String scriptAction "script"
private static final java.lang.String toWebActionProperty "toweb"
private static final java.lang.String uguideAction "uguide"
private static final java.lang.String WEB_MAKER_WINDOW_NAME "JmolWebPageMaker"
private static final java.lang.String whatsnewAction "whatsnew"
private static final java.lang.String writeActionProperty "write"

org.openscience.jmol.app.org.openscience.jmol.app.RecentFilesDialog
private static final int MAX_FILES 10

org.openscience.jmol.app.Splash
private static final int BORDERSIZE 10
private static final int STATUSSIZE 10

org.openscience.jmol.app.webexport.org.openscience.jmol.app.webexport.Molecules
private static final int BallandStick 2
private static final int FromLinks 1
private static final int FromMenu 2
private static final long serialVersionUID 1L
private static final int Spacefilling 3
private static final int Wireframe 1

org.openscience.jmol.app.webexport.Orbitals
private static final java.lang.String newline "\n"
private static final long serialVersionUID 1L
private static final int SmallAtomDot 1
private static final int Wireframe 2

org.openscience.jmol.app.webexport.Test
private static final long serialVersionUID 1L

org.openscience.jmol.app.webexport.WebExport
private static final int IN_JMOL 1
private static final int STAND_ALONE 0

org.openscience.jmol.app.webexport.WebMaker
private static final java.lang.String WEB_MAKER_WINDOW_NAME "JmolWebPageMaker"