$,BSgenome-method |
BSgenome objects |
available.genomes |
available.genomes |
available.SNPs |
SNP injection |
bsapply |
bsapply |
BSgenome |
BSgenome objects |
BSgenome |
BSgenome objects |
BSgenome-class |
BSgenome objects |
BSgenomeDataPkgSeed |
The BSgenomeForge functions |
BSgenomeDataPkgSeed-class |
The BSgenomeForge functions |
BSgenomeForge |
The BSgenomeForge functions |
BSParams |
Class "BSParams" |
BSParams-class |
Class "BSParams" |
class:BSgenome |
BSgenome objects |
class:BSgenomeDataPkgSeed |
The BSgenomeForge functions |
class:BSParams |
Class "BSParams" |
class:GenomeDescription |
GenomeDescription objects |
coerce,GenomeData,data.frame-method |
Data on the genome |
coerce,GenomeDataList,data.frame-method |
List of GenomeData objects |
forgeBSgenomeDataPkg |
The BSgenomeForge functions |
forgeBSgenomeDataPkg,BSgenomeDataPkgSeed-method |
The BSgenomeForge functions |
forgeBSgenomeDataPkg,character-method |
The BSgenomeForge functions |
forgeBSgenomeDataPkg,list-method |
The BSgenomeForge functions |
forgeMasksFiles |
The BSgenomeForge functions |
forgeSeqFiles |
The BSgenomeForge functions |
forgeSeqlengthsFile |
The BSgenomeForge functions |
gdApply |
Applies a function to elements of a GenomeData |
gdapply |
Applies a function to elements of a GenomeData |
gdApply,GenomeData,function-method |
Applies a function to elements of a GenomeData |
gdapply,GenomeData,function-method |
Applies a function to elements of a GenomeData |
gdApply,GenomeDataList,function-method |
Applies a function to elements of a GenomeData |
gdapply,GenomeDataList,function-method |
Applies a function to elements of a GenomeData |
GenomeData |
Data on the genome |
GenomeData-class |
Data on the genome |
GenomeDataList |
List of GenomeData objects |
GenomeDataList-class |
List of GenomeData objects |
GenomeDescription |
GenomeDescription objects |
GenomeDescription-class |
GenomeDescription objects |
getSeq |
getSeq |
getSeq,BSgenome-method |
getSeq |
injectSNPs |
SNP injection |
injectSNPs,BSgenome-method |
SNP injection |
length,BSgenome-method |
BSgenome objects |
masknames |
BSgenome objects |
masknames,BSgenome-method |
BSgenome objects |
mseqnames |
BSgenome objects |
mseqnames,BSgenome-method |
BSgenome objects |
names,BSgenome-method |
BSgenome objects |
organism |
GenomeDescription objects |
organism,GenomeData-method |
Data on the genome |
organism,GenomeDescription-method |
GenomeDescription objects |
provider |
GenomeDescription objects |
provider,GenomeData-method |
Data on the genome |
provider,GenomeDescription-method |
GenomeDescription objects |
providerVersion |
GenomeDescription objects |
providerVersion,GenomeData-method |
Data on the genome |
providerVersion,GenomeDescription-method |
GenomeDescription objects |
releaseDate |
GenomeDescription objects |
releaseDate,GenomeDescription-method |
GenomeDescription objects |
releaseName |
GenomeDescription objects |
releaseName,GenomeDescription-method |
GenomeDescription objects |
seqlengths |
BSgenome objects |
seqlengths,BSgenome-method |
BSgenome objects |
seqnames |
BSgenome objects |
seqnames,BSgenome-method |
BSgenome objects |
show,BSgenome-method |
BSgenome objects |
show,GenomeData-method |
Data on the genome |
show,GenomeDescription-method |
GenomeDescription objects |
SNPcount |
SNP injection |
SNPcount,BSgenome-method |
SNP injection |
SNPlocs |
SNP injection |
SNPlocs,BSgenome-method |
SNP injection |
SNPlocs_pkgname |
SNP injection |
SNPlocs_pkgname,BSgenome-method |
SNP injection |
sourceUrl |
BSgenome objects |
sourceUrl,BSgenome-method |
BSgenome objects |
species |
GenomeDescription objects |
species,GenomeDescription-method |
GenomeDescription objects |
strand |
Accessing strand information |
strand,character-method |
Accessing strand information |
strand,missing-method |
Accessing strand information |
strand-methods |
Accessing strand information |
[[,BSgenome-method |
BSgenome objects |
[[<-,BSgenome-method |
BSgenome objects |