org.jmol.adapter.readers.molxyz

Class XyzReader

public class XyzReader extends AtomSetCollectionReader

Minnesota SuperComputer Center XYZ file format simple symmetry extension via load command: 9/2006 hansonr@stolaf.edu setAtomCoord(atom) applySymmetry() extended to read XYZI files (Bob's invention -- allows isotope numbers) extended to read XYZ files with fractional charges as, for example: http://www.ccl.net/cca/software/SOURCES/FORTRAN/molden/test/reacpth.xyz http://web.archive.org/web/20000120031517/www.msc.edu/msc/docs/xmol/v1.3/g94toxyz.c
Method Summary
intreadAtomCount()
voidreadAtoms(int modelAtomCount)
AtomSetCollectionreadAtomSetCollection(BufferedReader reader)
voidreadAtomSetName()
voidskipAtomSet(int modelAtomCount)

Method Detail

readAtomCount

int readAtomCount()

readAtoms

void readAtoms(int modelAtomCount)

readAtomSetCollection

public AtomSetCollection readAtomSetCollection(BufferedReader reader)

readAtomSetName

void readAtomSetName()

skipAtomSet

void skipAtomSet(int modelAtomCount)