org.jmol.modelset
public final class Chain extends Object
Field Summary | |
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BitSet | bsSelectedGroups |
char | chainID |
int | groupCount |
Group[] | groups |
boolean | isDna |
boolean | isRna |
Model | model |
ModelSet | modelSet |
int | selectedGroupCount |
Constructor Summary | |
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Chain(ModelSet modelSet, Model model, char chainID) |
Method Summary | |
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void | calcSelectedGroupsCount(BitSet bsSelected)
prior to coloring by group, we need the chain count per chain
that is selected
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void | fixIndices(int atomsDeleted) |
Atom | getAtom(int index) |
int | getAtomCount() |
char | getChainID() |
Group | getGroup(int groupIndex) |
int | getGroupCount() |
ModelSet | getModelSet() |
int | getSelectedGroupCount() |
boolean | isDna() |
boolean | isRna() |
int | selectSeqcodeRange(int index0, int seqcodeA, int seqcodeB, BitSet bs) |
void | setIsDna(boolean TF) |
void | setIsRna(boolean TF) |
void | setModelSet(ModelSet modelSet) |
void | updateOffsetsForAlternativeLocations(BitSet bsSelected, int nAltLocInModel, byte[] offsets, int firstAtomIndex, int lastAtomIndex) |
Parameters: bsSelected